RnoINT0147588 @ rn6
Intron Retention
Gene
ENSRNOG00000008859 | Tank
Description
TRAF family member-associated NFKB activator [Source:RGD Symbol;Acc:628859]
Coordinates
chr3:47505224-47505983:+
Coord C1 exon
chr3:47505224-47505294
Coord A exon
chr3:47505295-47505867
Coord C2 exon
chr3:47505868-47505983
Length
573 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTT
5' ss Score
1.96
3' ss Seq
AAATATGGATTTGTTTTTAGGGA
3' ss Score
6.73
Exon sequences
Seq C1 exon
GTGAGAAGACAAGAAGTTTCTTCTGGAAAAGAGACCTCAAAGGATCTGAGCATCCCTTTGCATCATGAAAG
Seq A exon
GTGGTTCTAGAGCCTTCTTTGCCAATCCAAAATGTATAATTATTACAATATGCAGTATTTGGATGGTTTTAAATTTTTTAACAATTGTAAAAGAAAAACAGTTGATCTTAACCACTGGAGTAGACCTGTGTGTGGAAATGACCTAAGTATATCACATGGTTACAAGCAGAACAAGATCTAAAACACGGACCGTGGTAGTGTTAATGGTCCCCATTTCAATAGCCCTGTATAGTAACTGTATCGTTTGACATGGGTGGATCCTGATAGGAAGCAGAGTGAGGAAGAAATACTGCTCTATTTATGGTGTTCACAGTGAACTGATGTGTGTAGAACAAGTATGCACAAGTAGACTCACGAGCCTGCAGTGCGTTTATGAACTCGGACTTCTGCATTTGCTTTGTGCCTAGCTTTCCAAATATTAGAATTGTCTGAGGATATTTTCTTCAAATTTAAATTTTATTTTTAGTGTTTCACTTTCCAATAATTCTGTGGTCCATAAAAACTATGCTATGTATATTTAAACATCATTTGAAGGTATAACCCTAACATTTTAAAATATGGATTTGTTTTTAG
Seq C2 exon
GGATAATATAGAGAAGACTTTCTGGGACCTTAAAGAAGAATTTCATAGGATATGCTTACTAGCAAAAGCACAGAAAGACCACTTAAGCAAACTTAATATACCAGATATTGCAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008859:ENSRNOT00000011794:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.875 A=NA C2=0.025
Domain overlap (PFAM):
C1:
PF067856=UPF0242=FE(16.4=100),PF128452=TBD=PU(8.8=20.8)
A:
NA
C2:
PF067856=UPF0242=PD(5.7=20.0),PF128452=TBD=FE(68.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]