GgaINT1031381 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr7:20962890-20964385:-
Coord C1 exon
chr7:20964206-20964385
Coord A exon
chr7:20962967-20964205
Coord C2 exon
chr7:20962890-20962966
Length
1239 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
CTTTCATGTTTTACTTCAAGGTG
3' ss Score
9.26
Exon sequences
Seq C1 exon
GAACAGTTAGAAAATGAGAGCATGAAGTTGAAGCAACTTGAGGACAGAAACAGTGAAAAGGAAAGGAGGCTTATGTCTATTGTTTCCAACCAAGAAGATAAAATACGAACTCTGAAAAACAAATTGAAAGAATTAAGTGACGCCCAAAAGGGTACACAGATGCCAACATACAAAATAGAG
Seq A exon
GTAAGATAAGAAACCAAGTGGAGATGAAATGTAAAAAACAATCTGTAAAATACAACTCTTTTCAAACACATTTATACTAATTATTCTAAGAAAATGATTTTAAATTTCAACATTATATCATTACTAGGAAATTGTTAAAGTGTGTAAAGCATGTAGGAAACTCTGAACTATTCGATACATTGGTTGGTTTATATGTTAGTTATTTTTACAGTCTATCATCATTATAGTAGCATTTGCAAAAACTGGAGATCAGCATTTCAGTTTTATAATCTTCCATTGGGGGTTTTCATCAAGATTGAGTTGATTTTTTTGCAGTTACCCCACTCTATTTTTGTTACAGAATAGCATCTAGAGTGAAATACAGTTTGGGGATAGCTGCACTGCAGTCACTGGTGGAAATGTAATCTTGTAAATGCCTTTTAGCTAGCTAATTTGAATTGAATACAGGTAAGAGGATGAGCACAGCAACACATAACTTGTTGCTGTCAGACTTTCCAAGCACAGTAAGACATTTGTAACCAATGCTGTTAGGAATAAAGCGGCTCAAATGTTCCAGTAGGAGCCGCAGTTGCACTTTAACACCAGGTAGGCTACGAGTCAGTGATTATAAGCAATGTATCACTGAAATCAGCTAATTTGACAGACGGATGATCATGTCATGAGTCTGATGTGGAGCACATATGAACATATCCAGGCCATCTGGTAATGTAGATCTAGTGGAACTGCAACTTAATGGCTGTTTATTGTAAAAACTTTTAATACCTTGCCTTGACTTAAAGCTACGTAATACTAGAATGAACCACAAGGTGGTAGTCAAAGCTAAGAACATCTTGACACATTCACTTTTGATGTCTTCATTGATTTTTTTTATGAATAAATTGATTATTTTTTTTTCCTAAGAGCTGGAATTTCTGGGTGCCTCAGTAACAAACTTATACATAATACATAATCTGAATCTTATATATGATTGAAACAGACTTACAGTGAAGCAAGATTCTTAGAACCAGTTTCCTTTTAAGGAAGCATGAGCAGAGGAATGCCATCCTGAGTTGCTAAAAACTAAACTAAAAATAGGGATTTCACAAAAACAGTAAAAAAATTTATTTGTCATTTTGTGAATGTTTTGAGTGCTTCCAGAAGGAGTAGATGAAGGGTACTGCGGCGTTTGTAATCATATCAGGGTGAAGAGCAAAATGAATACGCTAACCTGTGATCCGTACTTTCATGTTTTACTTCAAG
Seq C2 exon
GTGAAAAGTAAGAAAGTTGTTCCAGATAAGCCTGAATTATCTATAGGGATTTCTGGTATTTCACCTTTGCCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011131:ENSGALT00000033125:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTTAGAAAATGAGAGCATGAAGT
R:
AGAAATCCCTATAGATAATTCAGGCT
Band lengths:
232-1471
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]