GgaEX0017150 @ galGal4
Exon Skipping
Gene
ENSGALG00000011389 | TRAF3
Description
TNF receptor-associated factor 3 [Source:HGNC Symbol;Acc:HGNC:12033]
Coordinates
chr5:49736515-49754380:+
Coord C1 exon
chr5:49736515-49736656
Coord A exon
chr5:49741661-49741803
Coord C2 exon
chr5:49754124-49754380
Length
143 bp
Sequences
Splice sites
3' ss Seq
TTCAACTTTTCTTTCCTTAGGGT
3' ss Score
11.52
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
CAGGAAAGCCTGAGTGCTTAGGCTTTAACTGAATCAAGACCAGCTCTCAGCAGCAGGAGACAATATATTAATCCATTGGAAGTACACACTGCAGTTTCGTGTATCACTGTGTTTATGCTGTGAATTTTTTTCATGTAAACAG
Seq A exon
GGTGAAGAAAGAAACCGGGCAGACTAGCAAAGTTCTTTTTGTCAAGAGTAAAGAGAACCCTTACAGAACATTGAGAAAGTGCTTTTTTTCTCCTCTCTTCTCAAGCTACAGATCAAATGAGATTCAAATAAAACGAAGGAAAT
Seq C2 exon
AAATTATCTTAGAGCATGGACACCAGTAAGAAGACAGAACCCCCTTTATCTGTAGAAATGGTACAACAAAGGGCCAATCCTGATCGCAGTCCTTCAGCATCAATTTATGTTCCAGAGCAAGGTGGCTACAAAGAAAAATTTGTAAATGCTGTGGAGGATAAGTATAAATGTGAAAAATGTCACTTCATCTTATGCAATCCTAAACAGACTGAATGTGGACACAGATTCTGTGAGACTTGCATGAATGCCTTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011389_MULTIEX1-6/7=4-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.346
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF139231=zf-C3HC4_2=PU(74.4=35.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATCAAGACCAGCTCTCAGC
R:
GTAGCCACCTTGCTCTGGAAC
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]