GgaEX0017180 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39033983-39041024:-
Coord C1 exon
chr2:39040921-39041024
Coord A exon
chr2:39037968-39038082
Coord C2 exon
chr2:39033983-39034088
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAATACCTTCTTTCTTTTAGCTA
3' ss Score
6.89
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GAGAAAAGGAAGATACCTAAGTTTCCAAATGGATCTACTCCTACAGGAGAGACTCTCAAAGAAGAAGGTCATCATGCTGGACCTGAACTTGAGAGAACTGGAAG
Seq A exon
CTATCTGGAATTGTTTGCGGGTTTGTTCCTGCCTTCAGATTCTTGGTGTGCATCATTGAATATAAAACTTAGTTACTGCACACACATGTTCAAGCACTGTAGCTGACACTGTAAG
Seq C2 exon
GTGTGTATGTTCTGAGCCTCAGAACCCCAGCAACGAAACCTTGAAGGCTTGGGGGAAGATGAATAAATCTGTGGAAACTATCGCATGGAGTAACCTTACAGTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405_MULTIEX3-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.766 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.1)
A:
PF0095516=HCO3_cotransp=PD(19.5=66.7)
C2:
PF0095516=HCO3_cotransp=FE(15.1=100)
Main Inclusion Isoform:
ENSGALT00000018603fB2015
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAAGGAAGATACCTAAGTTTCC
R:
AGTTACTGTAAGGTTACTCCATGCG
Band lengths:
210-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]