GgaEX0017180 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38453260-38455996:-
Coord C1 exon
chr2:38455822-38455996
Coord A exon
chr2:38454532-38454646
Coord C2 exon
chr2:38453260-38453393
Length
115 bp
Sequences
Splice sites
3' ss Seq
AAATACCTTCTTTCTTTTAGCTA
3' ss Score
6.89
5' ss Seq
AAGGTACAC
5' ss Score
7.56
Exon sequences
Seq C1 exon
GCTTTTTGGTGGTTTGATACTTGACATCCAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGCCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTCCTGGGAGAAGCTACACAAGGCAGAATA
Seq A exon
CTATCTGGAATTGTTTGCGGGTTTGTTCCTGCCTTCAGATTCTTGGTGTGCATCATTGAATATAAAACTTAGTTACTGCACACACATGTTCAAGCACTGTAGCTGACACTGTAAG
Seq C2 exon
AGTGCAATAGAATCCCTCTTTGGAGCCTCGTTAACTGGGATTGCCTATTCTCTCTTTGCTGGGCAACCTCTTACTATTTTGGGGAGTACCGGACCAGTTCTAGTATTTGAAAAAATACTATTTAAATTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'29-26,'29-25,32-26
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=PD(19.5=66.7)
C2:
PF0095516=HCO3_cotransp=FE(8.5=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATCCAAAGGAAAGCACCT
R:
TGGTCCGGTACTCCCCAAAAT
Band lengths:
250-365
Functional annotations
There are 0 annotated functions for this event