GgaEX0017179 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38453260-38457588:-
Coord C1 exon
chr2:38457485-38457588
Coord A exon
chr2:38455822-38455996
Coord C2 exon
chr2:38453260-38453393
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTTTCATCTCACCTATTTAGGCT
3' ss Score
8.32
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GAGAAAAGGAAGATACCTAAGTTTCCAAATGGATCTACTCCTACAGGAGAGACTCTCAAAGAAGAAGGTCATCATGCTGGACCTGAACTTGAGAGAACTGGAAG
Seq A exon
GCTTTTTGGTGGTTTGATACTTGACATCCAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGCCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTCCTGGGAGAAGCTACACAAGGCAGAATA
Seq C2 exon
AGTGCAATAGAATCCCTCTTTGGAGCCTCGTTAACTGGGATTGCCTATTCTCTCTTTGCTGGGCAACCTCTTACTATTTTGGGGAGTACCGGACCAGTTCTAGTATTTGAAAAAATACTATTTAAATTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'28-26,'28-23,29-26
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.743 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.1)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAAGGAAGATACCTAAGTTTCC
R:
TTTTTCAAATACTAGAACTGGTCCGG
Band lengths:
218-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]