RnoEX0082869 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11860863-11866282:-
Coord C1 exon
chr15:11866176-11866282
Coord A exon
chr15:11863993-11864167
Coord C2 exon
chr15:11860863-11860996
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTCTCATCTCACCTATTTAGGCT
3' ss Score
8.55
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GAGAAAAGGAAGATTCCTGCGTTTCCCAATGGATCTGCTCCAGTGTCTGCTGACCCTCCTAAGGAGGCTGATCACCACGCTGGGCCTGAGCTGCAGAGGACTGGACG
Seq A exon
GCTTTTTGGTGGTTTGATACTTGACATCAAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGTCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTGCTTGGAGAAGCTACAGAAGGCAGAATA
Seq C2 exon
AGTGCAATAGAGTCTCTTTTTGGAGCATCATTAACTGGGATTGCCTATTCATTGTTTGCTGGGCAACCTCTAACAATACTGGGGAGCACGGGTCCAGTCCTAGTGTTTGAAAAAATTTTATTTAAATTCTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.759 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=16.7)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATTCCTGCGTTTCCCA
R:
TCAAACACTAGGACTGGACCCG
Band lengths:
210-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]