RnoEX0082860 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11859545-11864167:-
Coord C1 exon
chr15:11863993-11864167
Coord A exon
chr15:11860863-11860996
Coord C2 exon
chr15:11859545-11859790
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTCATTTCCCCCTTAAACAGAGT
3' ss Score
7.63
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
Exon sequences
Seq C1 exon
GCTTTTTGGTGGTTTGATACTTGACATCAAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGTCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTGCTTGGAGAAGCTACAGAAGGCAGAATA
Seq A exon
AGTGCAATAGAGTCTCTTTTTGGAGCATCATTAACTGGGATTGCCTATTCATTGTTTGCTGGGCAACCTCTAACAATACTGGGGAGCACGGGTCCAGTCCTAGTGTTTGAAAAAATTTTATTTAAATTCTGTAG
Seq C2 exon
AGATTATCACCTATCCTATCTATCATTAAGAACCAGTATTGGTCTGTGGACTTCTTTCTTGTGCATTGTGTTGGTCGCAACAGATGCCAGCAGCCTTGTTTGTTACATTACTCGGTTCACAGAAGAAGCTTTCGCCGCACTCATTTGTATCATCTTCATCTATGAAGCCTTGGAGAAACTCTTTCACTTAGGAGAAATATATGCATTTAACATGCACAACAACTTGGATGCATTGACCAGTTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-'22-23,'22-22,24-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(8.5=100)
C2:
PF0095516=HCO3_cotransp=FE(15.9=100)
Main Skipping Isoform:
ENSRNOT00000008759fB13736
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAAGTCTGCAGTGCCTGGC
R:
TGATACAAATGAGTGCGGCGA
Band lengths:
258-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]