GgaEX0017181 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39035920-39039432:-
Coord C1 exon
chr2:39039258-39039432
Coord A exon
chr2:39036696-39036829
Coord C2 exon
chr2:39035920-39036165
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTCCCCTGAACAGAGT
3' ss Score
8.56
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCTTTTTGGTGGTTTGATACTTGACATCCAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGCCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTCCTGGGAGAAGCTACACAAGGCAGAATA
Seq A exon
AGTGCAATAGAATCCCTCTTTGGAGCCTCGTTAACTGGGATTGCCTATTCTCTCTTTGCTGGGCAACCTCTTACTATTTTGGGGAGTACCGGACCAGTTCTAGTATTTGAAAAAATACTATTTAAATTTTGCAG
Seq C2 exon
GGATTATGGGCTTTCCTACCTCTCCCTACGAACTAGCATTGGTCTGTGGACTGCGTTTTTATGCATAGTGCTTGTAGCAACAGATGCCAGCAGCCTTGTCTGTTACATCACTCGATTTACTGAGGAAGCTTTTGCAGCGCTTATATGCATCATATTTATTTATGAGGCATTGGAAAAGCTTTTTCATTTGGGAGAAGTGTATGCCTTCAATATGCACAATAATTTGGATAGACTGACTTTATATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'37-32,'37-31,42-32
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(19.0=100)
C2:
PF0095516=HCO3_cotransp=FE(15.9=100)
Main Skipping Isoform:
ENSGALT00000018603fB2015
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATCCAAAGGAAAGCACCT
R:
AAGGCTGCTGGCATCTGTTG
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]