DreEX6042457 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42808778-42812025:-
Coord C1 exon
chr16:42811851-42812025
Coord A exon
chr16:42811303-42811436
Coord C2 exon
chr16:42808778-42809023
Length
134 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTGCATTTGATCCAGAGT
3' ss Score
6.16
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GATATTTGGGGGCCTGGTGCTAGACTTGAAGCGGAAAGCTCCGTTTTACTGGAGTGATGTTCGGGATGCTTTTAGCCTGCAGTGTTTGGCCTCCATCCTTTTCCTCTATTGTGCCTGTATGTCCCCCGTCATCACCTTCGGAGGCCTTCTGGGGGAAGCCACCAAAAACAACATA
Seq A exon
AGTGCCATTGAGTCTCTATTTGGAGCTTCACTCACCGGTGTGGCCTTCTCTCTGTTTGCCGGTCAGCCTCTCACTATCCTGGGCAGCACCGGGCCAGTTTTGGTTTTTGAGAAGATTCTTTTTAAGTTCTGCAG
Seq C2 exon
TGACTACGGTTTGTCCTACCTCCCTCTGCGCACCAGCATTGGCCTGTGGACGGCTTTCTTGTGCCTTCTTCTGGTCGCCACAGATGCCAGCTCTTTGGTGTGCTACATAACAAGATTCACAGAAGAGGCCTTCGCTGCTCTCATCTGCATCATCTTCATCTACGAGGCCTTGGAGAAGCTCTTCCAGCTGGGGAAAATGTACCCTTTCAACATGCATGATGATTTGAACAACCTCACATTTTACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-'18-17,'18-16,19-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(8.7=100)
C2:
PF0095516=HCO3_cotransp=FE(15.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGCTTTTAGCCTGCAGT
R:
GCGAAGGCCTCTTCTGTGAAT
Band lengths:
248-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]