GgaEX0017181 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38452484-38455996:-
Coord C1 exon
chr2:38455822-38455996
Coord A exon
chr2:38453260-38453393
Coord C2 exon
chr2:38452484-38452729
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTCCCCTGAACAGAGT
3' ss Score
8.56
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GCTTTTTGGTGGTTTGATACTTGACATCCAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGCCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTCCTGGGAGAAGCTACACAAGGCAGAATA
Seq A exon
AGTGCAATAGAATCCCTCTTTGGAGCCTCGTTAACTGGGATTGCCTATTCTCTCTTTGCTGGGCAACCTCTTACTATTTTGGGGAGTACCGGACCAGTTCTAGTATTTGAAAAAATACTATTTAAATTTTGCAG
Seq C2 exon
GGATTATGGGCTTTCCTACCTCTCCCTACGAACTAGCATTGGTCTGTGGACTGCGTTTTTATGCATAGTGCTTGTAGCAACAGATGCCAGCAGCCTTGTCTGTTACATCACTCGATTTACTGAGGAAGCTTTTGCAGCGCTTATATGCATCATATTTATTTATGAGGCATTGGAAAAGCTTTTTCATTTGGGAGAAGTGTATGCCTTCAATATGCACAATAATTTGGATAGACTGACTTTATATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'29-27,'29-26,33-27
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(11.3=100)
A:
PF0095516=HCO3_cotransp=FE(8.5=100)
C2:
PF0095516=HCO3_cotransp=FE(15.9=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACATCCAAAGGAAAGCACCT
R:
AAGGCTGCTGGCATCTGTTG
Band lengths:
251-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]