RnoEX6051280 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11855185-11860996:-
Coord C1 exon
chr15:11860863-11860996
Coord A exon
chr15:11859545-11859790
Coord C2 exon
chr15:11855185-11855290
Length
246 bp
Sequences
Splice sites
3' ss Seq
CTGTTTATATTTCAAAACAGAGA
3' ss Score
6.61
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
AGTGCAATAGAGTCTCTTTTTGGAGCATCATTAACTGGGATTGCCTATTCATTGTTTGCTGGGCAACCTCTAACAATACTGGGGAGCACGGGTCCAGTCCTAGTGTTTGAAAAAATTTTATTTAAATTCTGTAG
Seq A exon
AGATTATCACCTATCCTATCTATCATTAAGAACCAGTATTGGTCTGTGGACTTCTTTCTTGTGCATTGTGTTGGTCGCAACAGATGCCAGCAGCCTTGTTTGTTACATTACTCGGTTCACAGAAGAAGCTTTCGCCGCACTCATTTGTATCATCTTCATCTATGAAGCCTTGGAGAAACTCTTTCACTTAGGAGAAATATATGCATTTAACATGCACAACAACTTGGATGCATTGACCAGTTACAC
Seq C2 exon
ATGTGTATGTGCTGAGCCATCTAATCCTAGCAACGAAACTGTAGAGCTGTGGGAGAGGAAGAACGTGACAGCAGCCAGTATTTCCTGGGCAAACCTTACCGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-'24-27,'24-23,25-27=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(8.5=100)
A:
PF0095516=HCO3_cotransp=FE(15.9=100)
C2:
PF0095516=HCO3_cotransp=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATAGAGTCTCTTTTTGGAGCA
R:
GACACGGTAAGGTTTGCCCAG
Band lengths:
237-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]