GgaEX0017183 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39033983-39041024:-
Coord C1 exon
chr2:39040921-39041024
Coord A exon
chr2:39035920-39036165
Coord C2 exon
chr2:39033983-39034088
Length
246 bp
Sequences
Splice sites
3' ss Seq
TTTTAATCTCTTTTATACAGGGA
3' ss Score
8.06
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
GAGAAAAGGAAGATACCTAAGTTTCCAAATGGATCTACTCCTACAGGAGAGACTCTCAAAGAAGAAGGTCATCATGCTGGACCTGAACTTGAGAGAACTGGAAG
Seq A exon
GGATTATGGGCTTTCCTACCTCTCCCTACGAACTAGCATTGGTCTGTGGACTGCGTTTTTATGCATAGTGCTTGTAGCAACAGATGCCAGCAGCCTTGTCTGTTACATCACTCGATTTACTGAGGAAGCTTTTGCAGCGCTTATATGCATCATATTTATTTATGAGGCATTGGAAAAGCTTTTTCATTTGGGAGAAGTGTATGCCTTCAATATGCACAATAATTTGGATAGACTGACTTTATATTC
Seq C2 exon
GTGTGTATGTTCTGAGCCTCAGAACCCCAGCAACGAAACCTTGAAGGCTTGGGGGAAGATGAATAAATCTGTGGAAACTATCGCATGGAGTAACCTTACAGTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405_MULTIEX3-4/4=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.766 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.1)
A:
PF0095516=HCO3_cotransp=FE(15.9=100)
C2:
PF0095516=HCO3_cotransp=FE(15.1=100)
Main Skipping Isoform:
ENSGALT00000018603fB2015
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAAGGAAGATACCTAAGTTTCCA
R:
ACTGTAAGGTTACTCCATGCGA
Band lengths:
205-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]