BtaEX6093077 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1782604-1786016:-
Coord C1 exon
chr22:1785883-1786016
Coord A exon
chr22:1784505-1784750
Coord C2 exon
chr22:1782604-1782709
Length
246 bp
Sequences
Splice sites
3' ss Seq
TTATTTTTCTTCCCAAACAGAGA
3' ss Score
9.43
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
AGTGCAATAGAGTCTCTTTTTGGAGCGTCATTAACTGGGATTGCCTACTCGTTGTTTGCTGGGCAACCTCTCACAATATTGGGGAGCACAGGTCCAGTTTTAGTGTTTGAAAAAATTTTATTTAAATTCTGCAG
Seq A exon
AGATTACCACCTTTCCTATCTGTCTCTGAGAACCAGTATTGGTCTATGGACTTCTTTCTTGTGCATTGTTTTGGTTGCAACAGATGCAAGCAGCCTGGTGTGTTACATCACTCGGTTCACTGAGGAGGCTTTTGCAGCTCTCATCTGCATCATATTCATCTACGAGGCTTTGGAGAAGCTCTTCCATTTAGGAGAAACATATGCATTTAATATGCACAACAATTTAGAGGAACTGACCAGCTACTC
Seq C2 exon
ATGTGTGTGTGTTGAGCCTTCTAACCCTGGCAATGAAACGCTGAAGATGTGGGAGAAAAATAATGTGACAGCCCGTGACATTCCCTGGGGGAACCTCACTGTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227-'31-27,'31-25,32-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(18.2=100)
A:
PF0095516=HCO3_cotransp=FE(15.9=100)
C2:
PF0095516=HCO3_cotransp=FE(14.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAATAGAGTCTCTTTTTGGAGCG
R:
AGACACAGTGAGGTTCCCCC
Band lengths:
237-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]