Special

MmuEX0043425 @ mm9

Exon Skipping

Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15598091-15603828:+
Coord C1 exon
chr14:15598091-15598224
Coord A exon
chr14:15599254-15599499
Coord C2 exon
chr14:15603723-15603828
Length
246 bp
Sequences
Splice sites
3' ss Seq
CCACTTATATTTCGAAACAGAGA
3' ss Score
5.93
5' ss Seq
CACGTAAGT
5' ss Score
10.16
Exon sequences
Seq C1 exon
AGTGCAATAGAGTCTCTTTTTGGAGCGTCATTAACTGGGATTGCCTATTCATTGTTTGCTGGGCAACCTCTAACAATACTGGGGAGCACAGGTCCAGTCCTAGTGTTTGAAAAAATTTTATTTAAATTCTGTAG
Seq A exon
AGATTATCACCTTTCCTATCTATCATTAAGAACCAGTATTGGTCTGTGGACATCTTTCTTGTGCATTGTATTGGTCGCAACAGATGCAAGCAGCCTTGTTTGTTACATTACTCGGTTCACAGAAGAAGCTTTTGCGGCTCTCATTTGTATCATATTCATCTATGAAGCTCTGGAGAAGCTCTTTCACTTAGGAGAAATATATGCATTTAATATGCACAACAACTTGGATGAATTGACCAGTTACAC
Seq C2 exon
ATGTGTATGTGCTGAGCCATCTAACCCTAGCAACGAAACTCTAGAACTGTGGAAGAGGAAGAATATAACAGCATACAGTGTTTCCTGGGGCAACCTTACTGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-'20-21,'20-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (Ref)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0095516=HCO3_cotransp=FE(11.8=100)

							
A:
PF0095516=HCO3_cotransp=FE(15.9=100)

							
C2:
PF0095516=HCO3_cotransp=FE(6.8=100)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000058313f1079A





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000058313, ENSMUSP00000088071, ENSMUSP00000128870
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr3:27403139-27403384 
HIGH PSI
HsaEX6054826
(SLC4A7)
Human
(hg19)
chr3:27444630-27444875 
HIGH PSI
HsaEX6054826
(SLC4A7)
Rat
(rn6)
chr15:11859545-11859790 
ALTERNATIVE
RnoEX6051280
(Slc4a7)
Cow
(bosTau6)
chr22:1784505-1784750 
HIGH PSI
BtaEX6093077
(SLC4A7)
Chicken
(galGal4)
chr2:39035920-39036165 
ALTERNATIVE
GgaEX0017183
(SLC4A7)
Chicken
(galGal3)
chr2:38452484-38452729 
ALTERNATIVE
GgaEX0017183
(SLC4A7)
Zebrafish
(danRer10)
chr16:42808778-42809023 
HIGH PSI
DreEX6042458
(slc4a7)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTGCAATAGAGTCTCTTTTTGGAGC

				
R: 
AACAGTAAGGTTGCCCCAGGA

				
Band lengths: 
236-482

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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