DreEX6042458 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42807353-42811436:-
Coord C1 exon
chr16:42811303-42811436
Coord A exon
chr16:42808778-42809023
Coord C2 exon
chr16:42807353-42807458
Length
246 bp
Sequences
Splice sites
3' ss Seq
CTGTATGTCTGTCTTCTCAGTGA
3' ss Score
8.45
5' ss Seq
CACGTAAGA
5' ss Score
7.45
Exon sequences
Seq C1 exon
AGTGCCATTGAGTCTCTATTTGGAGCTTCACTCACCGGTGTGGCCTTCTCTCTGTTTGCCGGTCAGCCTCTCACTATCCTGGGCAGCACCGGGCCAGTTTTGGTTTTTGAGAAGATTCTTTTTAAGTTCTGCAG
Seq A exon
TGACTACGGTTTGTCCTACCTCCCTCTGCGCACCAGCATTGGCCTGTGGACGGCTTTCTTGTGCCTTCTTCTGGTCGCCACAGATGCCAGCTCTTTGGTGTGCTACATAACAAGATTCACAGAAGAGGCCTTCGCTGCTCTCATCTGCATCATCTTCATCTACGAGGCCTTGGAGAAGCTCTTCCAGCTGGGGAAAATGTACCCTTTCAACATGCATGATGATTTGAACAACCTCACATTTTACAC
Seq C2 exon
ATGTCAGTGTTCACCTCCTTCCAATACCACACAGAAGATGGAGCAGTCATGGAACCAGTCAGGGTTTACTTATGACACCATTAATTGGACTGAGCTTAATGTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-'19-18,'19-17,20-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(8.7=100)
A:
PF0095516=HCO3_cotransp=FE(15.9=100)
C2:
PF0095516=HCO3_cotransp=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATTGAGTCTCTATTTGGAGC
R:
TGCACATTAAGCTCAGTCCAA
Band lengths:
237-483
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]