GgaEX0017183 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38450547-38453393:-
Coord C1 exon
chr2:38453260-38453393
Coord A exon
chr2:38452484-38452729
Coord C2 exon
chr2:38450547-38450652
Length
246 bp
Sequences
Splice sites
3' ss Seq
TTTTAATCTCTTTTATACAGGGA
3' ss Score
8.06
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
AGTGCAATAGAATCCCTCTTTGGAGCCTCGTTAACTGGGATTGCCTATTCTCTCTTTGCTGGGCAACCTCTTACTATTTTGGGGAGTACCGGACCAGTTCTAGTATTTGAAAAAATACTATTTAAATTTTGCAG
Seq A exon
GGATTATGGGCTTTCCTACCTCTCCCTACGAACTAGCATTGGTCTGTGGACTGCGTTTTTATGCATAGTGCTTGTAGCAACAGATGCCAGCAGCCTTGTCTGTTACATCACTCGATTTACTGAGGAAGCTTTTGCAGCGCTTATATGCATCATATTTATTTATGAGGCATTGGAAAAGCTTTTTCATTTGGGAGAAGTGTATGCCTTCAATATGCACAATAATTTGGATAGACTGACTTTATATTC
Seq C2 exon
GTGTGTATGTTCTGAGCCTCAGAACCCCAGCAACGAAACCTTGAAGGCTTGGGGGAAGATGAATAAATCTGTGGAAACTATCGCATGGAGTAACCTTACAGTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'33-28,'33-27,34-28
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(8.5=100)
A:
PF0095516=HCO3_cotransp=FE(15.9=100)
C2:
PF0095516=HCO3_cotransp=FE(6.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCAATAGAATCCCTCTTTGGA
R:
ACTGTAAGGTTACTCCATGCGA
Band lengths:
236-482
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]