HsaEX6054826 @ hg19
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27442255-27446454:-
Coord C1 exon
chr3:27446321-27446454
Coord A exon
chr3:27444630-27444875
Coord C2 exon
chr3:27442255-27442360
Length
246 bp
Sequences
Splice sites
3' ss Seq
ATATTTTTCTTTCTAAACAGAGA
3' ss Score
9.58
5' ss Seq
CTCGTAAGT
5' ss Score
9.63
Exon sequences
Seq C1 exon
AGTGCAATAGAGTCTCTTTTTGGAGCATCATTAACTGGGATTGCCTATTCATTGTTTGCTGGGCAACCTCTAACAATATTGGGGAGCACAGGTCCAGTTCTAGTGTTTGAAAAAATTTTATATAAATTCTGCAG
Seq A exon
AGATTATCAACTTTCTTATCTGTCTTTAAGAACCAGTATTGGTCTGTGGACTTCTTTTTTGTGCATTGTTTTGGTTGCAACAGATGCAAGCAGCCTTGTGTGTTATATTACTCGATTTACAGAAGAGGCTTTTGCAGCCCTTATTTGCATCATATTCATCTACGAGGCTTTGGAGAAGCTCTTTGATTTAGGAGAAACATATGCATTTAATATGCACAACAACTTAGATAAACTGACCAGCTACTC
Seq C2 exon
ATGTGTATGTACTGAACCTCCAAACCCCAGCAATGAAACTCTAGCACAATGGAAGAAAGATAATATAACAGCACACAATATTTCCTGGAGAAATCTTACTGTTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-'28-28,'28-25,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=FE(8.5=100)
A:
PF0095516=HCO3_cotransp=FE(15.9=100)
C2:
PF0095516=HCO3_cotransp=FE(6.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATAGAGTCTCTTTTTGGAGCA
R:
AGAAACAGTAAGATTTCTCCAGGA
Band lengths:
238-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)