DreEX6042456 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42811303-42814094:-
Coord C1 exon
chr16:42813991-42814094
Coord A exon
chr16:42811851-42812025
Coord C2 exon
chr16:42811303-42811436
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCTCTTCTTTCAGGAT
3' ss Score
13.62
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GAGAAGAGGAAGATGCCCTCCATGCCGAATGGCTCTACTCCACAATCAGATGTGATCAAACAAGAAGCACACCACGCTGGACCTGAACTGCAGAGGACGGGACG
Seq A exon
GATATTTGGGGGCCTGGTGCTAGACTTGAAGCGGAAAGCTCCGTTTTACTGGAGTGATGTTCGGGATGCTTTTAGCCTGCAGTGTTTGGCCTCCATCCTTTTCCTCTATTGTGCCTGTATGTCCCCCGTCATCACCTTCGGAGGCCTTCTGGGGGAAGCCACCAAAAACAACATA
Seq C2 exon
AGTGCCATTGAGTCTCTATTTGGAGCTTCACTCACCGGTGTGGCCTTCTCTCTGTTTGCCGGTCAGCCTCTCACTATCCTGGGCAGCACCGGGCCAGTTTTGGTTTTTGAGAAGATTCTTTTTAAGTTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-'17-16,'17-15,18-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.722 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=16.7)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGATGCCCTCCATGCCGAAT
R:
TGCAGAACTTAAAAAGAATCTTCTCA
Band lengths:
228-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]