HsaEX0059843 @ hg38
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4 member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr3:27404830-27411748:-
Coord C1 exon
chr3:27411642-27411748
Coord A exon
chr3:27409356-27409530
Coord C2 exon
chr3:27404830-27404963
Length
175 bp
Sequences
Splice sites
3' ss Seq
GTTTCATCTCACCTATTTAGGCT
3' ss Score
8.32
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GAAAAGAGAAAGATTCCTGTGTTTCACAATGGATCTACCCCCACACTGGGTGAGACTCCTAAAGAGGCCGCTCATCATGCTGGGCCTGAGCTACAGAGGACTGGACG
Seq A exon
GCTTTTTGGTGGTTTGATACTTGACATCAAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGCCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTGCTTGGAGAAGCTACAGAAGGCAGAATA
Seq C2 exon
AGTGCAATAGAGTCTCTTTTTGGAGCATCATTAACTGGGATTGCCTATTCATTGTTTGCTGGGCAACCTCTAACAATATTGGGGAGCACAGGTCCAGTTCTAGTGTTTGAAAAAATTTTATATAAATTCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.702 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=16.7)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(22.0=100)
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAGAGAAAGATTCCTGTGTTTCA
R:
TTCAAACACTAGAACTGGACCTGTG
Band lengths:
218-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development