RnoEX6051279 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11863993-11869075:-
Coord C1 exon
chr15:11868929-11869075
Coord A exon
chr15:11866176-11866282
Coord C2 exon
chr15:11863993-11864167
Length
107 bp
Sequences
Splice sites
3' ss Seq
CATATTTCTGTGAAATTCAGGAG
3' ss Score
4.98
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
ATTTTTCATGATGTAGCTTATAAAGCAAAAGATCGAAATGACCTCTTATCTGGAATTGATGAATTTTTAGATCAAGTAACTGTTCTTCCTCCAGGAGAGTGGGATCCTTCCATACGCATAGAGCCACCAAAAAGTGTTCCTTCTCAG
Seq A exon
GAGAAAAGGAAGATTCCTGCGTTTCCCAATGGATCTGCTCCAGTGTCTGCTGACCCTCCTAAGGAGGCTGATCACCACGCTGGGCCTGAGCTGCAGAGGACTGGACG
Seq C2 exon
GCTTTTTGGTGGTTTGATACTTGACATCAAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGTCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTGCTTGGAGAAGCTACAGAAGGCAGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-'20-19,'20-18,21-19=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.759 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(13.4=73.5)
A:
PF0095516=HCO3_cotransp=PU(1.2=16.7)
C2:
PF0095516=HCO3_cotransp=FE(11.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGTTCTTCCTCCAGGAGAGT
R:
TCTGCCTTCTGTAGCTTCTCCA
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]