DreEX0073092 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42811851-42814792:-
Coord C1 exon
chr16:42814646-42814792
Coord A exon
chr16:42813991-42814094
Coord C2 exon
chr16:42811851-42812025
Length
104 bp
Sequences
Splice sites
3' ss Seq
TATTAATTTTGTGTTTGCAGGAG
3' ss Score
8.6
5' ss Seq
ACGGTCAGC
5' ss Score
5.3
Exon sequences
Seq C1 exon
ATCTTTCATGATGTAGCGTACAAAGCCAAAGATAGGAACGACCTTCTGTCTGGCATTGATGAGTTCTTGGACCAGGTGACCGTTCTGCCTCCAGGAGAATGGGATCCCACGATACGAATTGAGCCTCCAAAGAGTGTCCCCTCTCAG
Seq A exon
GAGAAGAGGAAGATGCCCTCCATGCCGAATGGCTCTACTCCACAATCAGATGTGATCAAACAAGAAGCACACCACGCTGGACCTGAACTGCAGAGGACGGGACG
Seq C2 exon
GATATTTGGGGGCCTGGTGCTAGACTTGAAGCGGAAAGCTCCGTTTTACTGGAGTGATGTTCGGGATGCTTTTAGCCTGCAGTGTTTGGCCTCCATCCTTTTCCTCTATTGTGCCTGTATGTCCCCCGTCATCACCTTCGGAGGCCTTCTGGGGGAAGCCACCAAAAACAACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-'16-15,'16-14,17-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.220 A=0.722 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(13.8=74.0)
A:
PF0095516=HCO3_cotransp=PU(1.2=16.7)
C2:
PF0095516=HCO3_cotransp=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACCTTCTGTCTGGCATTG
R:
TGATGACGGGGGACATACAGG
Band lengths:
244-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]