GgaEX0017178 @ galGal3
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
NA
Coordinates
chr2:38455822-38458968:-
Coord C1 exon
chr2:38458822-38458968
Coord A exon
chr2:38457485-38457588
Coord C2 exon
chr2:38455822-38455996
Length
104 bp
Sequences
Splice sites
3' ss Seq
GTTGGGTTTTGTTGTTGTAGGAG
3' ss Score
6.49
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTTTTCCATGATGTTGCCTATAAAGCTAAAGATAGAAATGATTTATTATCAGGAATTGATGAATTTTTAGACCAAGTGACAGTACTACCTCCAGGAGAATGGGATCCATCTATACGAATTGAACCACCAAAAAGTGTTCCTTCCCAG
Seq A exon
GAGAAAAGGAAGATACCTAAGTTTCCAAATGGATCTACTCCTACAGGAGAGACTCTCAAAGAAGAAGGTCATCATGCTGGACCTGAACTTGAGAGAACTGGAAG
Seq C2 exon
GCTTTTTGGTGGTTTGATACTTGACATCCAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGCCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTCCTGGGAGAAGCTACACAAGGCAGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'24-23,'24-22,28-23
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.743 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(13.4=73.5)
A:
PF0095516=HCO3_cotransp=PU(1.2=17.1)
C2:
PF0095516=HCO3_cotransp=FE(11.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAAGTGACAGTACTACCTCCA
R:
GCCTTGTGTAGCTTCTCCCAG
Band lengths:
246-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]