HsaEX6054824 @ hg19
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27450847-27460123:-
Coord C1 exon
chr3:27459977-27460123
Coord A exon
chr3:27453133-27453239
Coord C2 exon
chr3:27450847-27451021
Length
107 bp
Sequences
Splice sites
3' ss Seq
ATGTTTTTTGTGAAATTCAGGAA
3' ss Score
7.24
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
Exon sequences
Seq C1 exon
ATTTTCCATGATGTAGCTTATAAAGCAAAAGACAGAAATGACCTCTTATCTGGAATTGATGAATTTTTAGATCAAGTAACTGTCCTACCTCCAGGAGAGTGGGATCCTTCTATACGCATAGAACCACCAAAAAGTGTCCCTTCTCAG
Seq A exon
GAAAAGAGAAAGATTCCTGTGTTTCACAATGGATCTACCCCCACACTGGGTGAGACTCCTAAAGAGGCCGCTCATCATGCTGGGCCTGAGCTACAGAGGACTGGACG
Seq C2 exon
GCTTTTTGGTGGTTTGATACTTGACATCAAAAGGAAAGCACCTTTTTTCTTGAGTGACTTCAAGGATGCATTAAGCCTGCAGTGCCTGGCCTCGATTCTTTTCCTATACTGTGCCTGTATGTCTCCTGTAATCACTTTTGGAGGGCTGCTTGGAGAAGCTACAGAAGGCAGAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-'24-22,'24-21,25-22=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.162 A=0.699 C2=0.000
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=PD(45.6=73.5)
A:
PF0095516=HCO3_cotransp=PU(1.2=16.7)
C2:
PF0095516=HCO3_cotransp=FE(11.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGTCCTACCTCCAGGAGA
R:
TCTGCCTTCTGTAGCTTCTCCA
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)