RnoEX0082858 @ rn6
Exon Skipping
Gene
ENSRNOG00000005957 | Slc4a7
Description
solute carrier family 4 member 7 [Source:RGD Symbol;Acc:621208]
Coordinates
chr15:11866176-11870978:-
Coord C1 exon
chr15:11870891-11870978
Coord A exon
chr15:11868929-11869075
Coord C2 exon
chr15:11866176-11866282
Length
147 bp
Sequences
Splice sites
3' ss Seq
CAGTATCTTCTTTTCTTTAGATT
3' ss Score
8.17
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GTTTTTGTTTCTGTTACTGGGCCCAGCAGGAAAGGCTCCACAGTACCATGAAATTGGCAGATCCATAGCAACTCTAATGACAGATGAG
Seq A exon
ATTTTTCATGATGTAGCTTATAAAGCAAAAGATCGAAATGACCTCTTATCTGGAATTGATGAATTTTTAGATCAAGTAACTGTTCTTCCTCCAGGAGAGTGGGATCCTTCCATACGCATAGAGCCACCAAAAAGTGTTCCTTCTCAG
Seq C2 exon
GAGAAAAGGAAGATTCCTGCGTTTCCCAATGGATCTGCTCCAGTGTCTGCTGACCCTCCTAAGGAGGCTGATCACCACGCTGGGCCTGAGCTGCAGAGGACTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005957-'18-18,'18-15,20-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.163 C2=0.759
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.8=100)
A:
PF075658=Band_3_cyto=PD(13.4=73.5)
C2:
PF0095516=HCO3_cotransp=PU(1.2=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTTGTTTCTGTTACTGGGCCC
R:
GTCCAGTCCTCTGCAGCTCAG
Band lengths:
194-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]