DreEX0073091 @ danRer10
Exon Skipping
Gene
ENSDARG00000073952 | slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:ZFIN;Acc:ZDB-GENE-140106-104]
Coordinates
chr16:42813991-42816648:-
Coord C1 exon
chr16:42816561-42816648
Coord A exon
chr16:42814646-42814792
Coord C2 exon
chr16:42813991-42814094
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTTCTCTACCAACATGACAGATC
3' ss Score
5.34
5' ss Seq
CAGGTAATC
5' ss Score
6.99
Exon sequences
Seq C1 exon
GTTTCTCTTCCTGCTGTTAGGGCCTTTCGGTAAAGGAGCCCAGTACCATGAGATTGGCAGATCTATAGCTACGTTGATGACAGATGAG
Seq A exon
ATCTTTCATGATGTAGCGTACAAAGCCAAAGATAGGAACGACCTTCTGTCTGGCATTGATGAGTTCTTGGACCAGGTGACCGTTCTGCCTCCAGGAGAATGGGATCCCACGATACGAATTGAGCCTCCAAAGAGTGTCCCCTCTCAG
Seq C2 exon
GAGAAGAGGAAGATGCCCTCCATGCCGAATGGCTCTACTCCACAATCAGATGTGATCAAACAAGAAGCACACCACGCTGGACCTGAACTGCAGAGGACGGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073952-'15-14,'15-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.220 C2=0.722
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.8=100)
A:
PF075658=Band_3_cyto=PD(13.8=74.0)
C2:
PF0095516=HCO3_cotransp=PU(1.2=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGCTGTTAGGGCCTT
R:
GTCCCGTCCTCTGCAGTTCAG
Band lengths:
186-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]