MmuEX0043423 @ mm9
Exon Skipping
Gene
ENSMUSG00000021733 | Slc4a7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:MGI Symbol;Acc:MGI:2443878]
Coordinates
chr14:15582949-15592855:+
Coord C1 exon
chr14:15582949-15583036
Coord A exon
chr14:15589799-15589945
Coord C2 exon
chr14:15592749-15592855
Length
147 bp
Sequences
Splice sites
3' ss Seq
CAGTTTCTTCTTTTTTATAGATT
3' ss Score
8.01
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTTTTGTTTCTGTTACTGGGCCCAGCAGGGAAAGCCCCACAGTACCATGAAATTGGCAGATCCATAGCAACTCTCATGACAGATGAG
Seq A exon
ATTTTTCATGATGTGGCTTATAAAGCAAAAGATCGTAATGACCTCCTATCTGGAATTGATGAATTCTTAGATCAAGTAACTGTTCTTCCTCCAGGAGAGTGGGATCCTTCCATACGCATAGAGCCTCCAAAAAGTGTTCCTTCTCAG
Seq C2 exon
GAAAAAAGGAAGATTCCTGTGTTTCCTAATGGATCTGCTGCAATGTCTGTTGACCCTCCCAAGGAGGATGATCACCATGCTGGGCCTGAGCTGCAGAGGACTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021733-'16-17,'16-15,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.163 C2=0.500
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.8=100)
A:
PF075658=Band_3_cyto=PD(13.4=73.5)
C2:
PF0095516=HCO3_cotransp=PU(1.2=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTTGTTTCTGTTACTGGGCCC
R:
GTCCAGTCCTCTGCAGCTCAG
Band lengths:
194-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: