GgaEX1053601 @ galGal4
Exon Skipping
Gene
ENSGALG00000011405 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:HGNC:11033]
Coordinates
chr2:39040921-39043988:-
Coord C1 exon
chr2:39043901-39043988
Coord A exon
chr2:39042258-39042404
Coord C2 exon
chr2:39040921-39041024
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGGGTGCTTTCTCTTTGTAGGTT
3' ss Score
11.46
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GTTTCTGTTTTTATTGCTGGGACCAGCAGGAAAAGCTCCGCAGTATCATGAAATTGGAAGATCAATAGCAACACTTATGACAGATGAT
Seq A exon
GTTTTCCATGATGTTGCCTATAAAGCTAAAGATAGAAATGATTTATTATCAGGAATTGATGAATTTTTAGACCAAGTGACAGTACTACCTCCAGGAGAATGGGATCCATCTATACGAATTGAACCACCAAAAAGTGTTCCTTCCCAG
Seq C2 exon
GAGAAAAGGAAGATACCTAAGTTTCCAAATGGATCTACTCCTACAGGAGAGACTCTCAAAGAAGAAGGTCATCATGCTGGACCTGAACTTGAGAGAACTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011405-'29-27,'29-24,32-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.163 C2=0.766
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.8=100)
A:
PF075658=Band_3_cyto=PD(13.4=73.5)
C2:
PF0095516=HCO3_cotransp=PU(1.2=17.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTTTTTATTGCTGGGACCAG
R:
CCAGTTCTCTCAAGTTCAGGTCC
Band lengths:
186-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]