BtaEX6093074 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018227 | SLC4A7
Description
Bos taurus solute carrier family 4, sodium bicarbonate cotransporter, member 7 (SLC4A7), mRNA. [Source:RefSeq mRNA;Acc:NM_001098926]
Coordinates
chr22:1791928-1805456:-
Coord C1 exon
chr22:1805369-1805456
Coord A exon
chr22:1803880-1804026
Coord C2 exon
chr22:1791928-1792034
Length
147 bp
Sequences
Splice sites
3' ss Seq
AATGTGTTTATTTTCTTTAGATT
3' ss Score
8.93
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTTTTTGTTTCTGTTGCTGGGGCCTGCAGGCAAGGCACCACAGTATCACGAAATTGGAAGATCAATAGCCACCCTCATGACGGATGAG
Seq A exon
ATTTTTCATGATGTAGCTTATAAAGCAAAAGACAGAAATGACCTCTTATCTGGAATTGATGAATTTTTAGATCAAGTGACTGTCCTACCTCCAGGAGAGTGGGACCCTTCCATACGCATAGAGCCACCGAAGAGTGTTCCCTCTCAG
Seq C2 exon
GAAAAGAGAAAGATTCCTGTATTTCCCAATGGATCTGCCCCCAGCTCGGGCGACGCCCCGAAGGAGGCAGCACACCACGCGGGGCCCGAGCTCCAGAGGACTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018227-'26-22,'26-20,27-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.149 C2=0.694
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(10.8=100)
A:
PF075658=Band_3_cyto=PD(9.2=73.5)
C2:
PF0095516=HCO3_cotransp=PU(1.2=16.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTTTCTGTTGCTGGGGC
R:
CAGTCCTCTGGAGCTCGGG
Band lengths:
189-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]