HsaEX0059836 @ hg19
Exon Skipping
Gene
ENSG00000033867 | SLC4A7
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 7 [Source:HGNC Symbol;Acc:11033]
Coordinates
chr3:27453133-27462278:-
Coord C1 exon
chr3:27462191-27462278
Coord A exon
chr3:27459977-27460123
Coord C2 exon
chr3:27453133-27453239
Length
147 bp
Sequences
Splice sites
3' ss Seq
TCAATATTTTTTTCACTTAGATT
3' ss Score
7.77
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GTTTTTGTTTTTGTTATTGGGTCCAGCGGGCAAGGCACCACAGTACCATGAAATTGGACGATCAATAGCCACTCTCATGACAGATGAG
Seq A exon
ATTTTCCATGATGTAGCTTATAAAGCAAAAGACAGAAATGACCTCTTATCTGGAATTGATGAATTTTTAGATCAAGTAACTGTCCTACCTCCAGGAGAGTGGGATCCTTCTATACGCATAGAACCACCAAAAAGTGTCCCTTCTCAG
Seq C2 exon
GAAAAGAGAAAGATTCCTGTGTTTCACAATGGATCTACCCCCACACTGGGTGAGACTCCTAAAGAGGCCGCTCATCATGCTGGGCCTGAGCTACAGAGGACTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033867-'23-21,'23-20,24-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.162 C2=0.699
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(36.7=100)
A:
PF075658=Band_3_cyto=PD(45.6=73.5)
C2:
PF0095516=HCO3_cotransp=PU(1.2=16.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGTTTTTGTTATTGGGTCCAGC
R:
CGTCCAGTCCTCTGTAGCTCA
Band lengths:
194-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)