GgaEX0017981 @ galGal4
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:RefSeq peptide;Acc:NP_001170856]
Coordinates
chr2:45293181-45298720:-
Coord C1 exon
chr2:45298619-45298720
Coord A exon
chr2:45298455-45298481
Coord C2 exon
chr2:45293181-45293351
Length
27 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTTCTGTGCCTTAGGTT
3' ss Score
9.17
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
GTCGTATACGAACAAAGCTTTCAACACCTTCTCTTGGCATTGGAAATTCTAAAACAGATTCCAGAGGACGGAGTAGAACCAAAGTGGTCTCTCAGTCTCAGC
Seq A exon
GTTCATCATCGCCAGAGAAAAATGAAG
Seq C2 exon
CTGGCAGTAGATCTGGATCTCCTGGAAGAGTTTTGACAACAACTACGCTTTCCACTATGAACACAGGGGTTCAGAGAGTGTTAGTGAACCCTGCAGCTGCACAAAAACGAAGCAAAATCCCAAGAAGTCAGGGATGCAGTAGAGAAGCCAGTCCTTCTAGATTGTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995_MULTIEX3-1/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000019569fB2113
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGTCTCTCAGTCTCAGC
R:
AGCTGCAGGGTTCACTAACAC
Band lengths:
119-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]