GgaEX0017981 @ galGal3
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44741281-44746828:-
Coord C1 exon
chr2:44746720-44746828
Coord A exon
chr2:44746556-44746582
Coord C2 exon
chr2:44741281-44741451
Length
27 bp
Sequences
Splice sites
3' ss Seq
GTTGTTGTTCTGTGCCTTAGGTT
3' ss Score
9.17
5' ss Seq
AAGGTATTT
5' ss Score
7.64
Exon sequences
Seq C1 exon
ATTATAGGTCGTATACGAACAAAGCTTTCAACACCTTCTCTTGGCATTGGAAATTCTAAAACAGATTCCAGAGGACGGAGTAGAACCAAAGTGGTCTCTCAGTCTCAGC
Seq A exon
GTTCATCATCGCCAGAGAAAAATGAAG
Seq C2 exon
CTGGCAGTAGATCTGGATCTCCTGGAAGAGTTTTGACAACAACTACGCTTTCCACTATGAACACAGGGGTTCAGAGAGTGTTAGTGAACCCTGCAGCTGCACAAAAACGAAGCAAAATCCCAAGAAGTCAGGGATGCAGTAGAGAAGCCAGTCCTTCTAGATTGTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-'41-44,'41-42,42-44
Average complexity
S
Mappability confidence:
100%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGGTCTCTCAGTCTCAGC
R:
AGCTGCAGGGTTCACTAACAC
Band lengths:
119-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]