GgaEX0017982 @ galGal3
Exon Skipping
Gene
ENSGALG00000011995 | CLASP2
Description
NA
Coordinates
chr2:44741281-44746656:-
Coord C1 exon
chr2:44746556-44746656
Coord A exon
chr2:44743482-44743508
Coord C2 exon
chr2:44741281-44741451
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTTACACTTGTTCAGGAT
3' ss Score
8.09
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TTGACAAATGGCTACAGTCAAAGTTAATTTAAAAAAAAACAAGCTACATACTGAGTTGTTGTTCTGTGCCTTAGGTTCATCATCGCCAGAGAAAAATGAAG
Seq A exon
GATCACAGTCTGCTAACCCCATTGGTG
Seq C2 exon
CTGGCAGTAGATCTGGATCTCCTGGAAGAGTTTTGACAACAACTACGCTTTCCACTATGAACACAGGGGTTCAGAGAGTGTTAGTGAACCCTGCAGCTGCACAAAAACGAAGCAAAATCCCAAGAAGTCAGGGATGCAGTAGAGAAGCCAGTCCTTCTAGATTGTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011995-'42-44,'42-43,43-44
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTAGGTTCATCATCGCCA
R:
ACACTCTCTGAACCCCTGTGT
Band lengths:
115-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]