RnoEX0021506 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122123051-122129541:+
Coord C1 exon
chr8:122123051-122123152
Coord A exon
chr8:122125879-122125905
Coord C2 exon
chr8:122129371-122129541
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTTGCACTTGTTCAGGAT
3' ss Score
8.45
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTCGGGTGAGAGCCAAGCTTTCTACACCACTTGTTGCTGTGGGAAATGCCAAGACCGATTCTAGAGGGAGAAGCCGGACAAAAATGGTGTCTCAGTCCCAGC
Seq A exon
GATCACAATCTGCTAATACCGTTGGTG
Seq C2 exon
CTGGCAGCAGATCTGGGTCTCCGGGAAGAGTTCTAACCACAACAGCCCTCTCTACTGTGAGCTCTGGTGCTCAACGAATCCTGGTCAATTCAGCTTCAGCACAGAAGAGAAGCAAGATACCAAGGAGCCAGGGCTGCAGCAGAGAGGCCAGCCCATCTAGGCTTTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161_MULTIEX3-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000091980fB3159
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGAAATGCCAAGACCGAT
R:
AGCTCACAGTAGAGAGGGCTG
Band lengths:
127-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]