BtaEX0009138 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011333 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr22:7864104-7869911:-
Coord C1 exon
chr22:7869885-7869911
Coord A exon
chr22:7867135-7867161
Coord C2 exon
chr22:7864104-7864274
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTTACACTTGTTCAGGAT
3' ss Score
8.09
5' ss Seq
GTGGTAAGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GTTCATCATCACCTGACAAAAATGAAG
Seq A exon
GATCACAATCTGCTAATACCATTGGTG
Seq C2 exon
CTGGCAGCCGGTCTGGTTCTCCAGGCAGAGTTCTGACCACAACAGCCCTCTCCACTGTGAGCTCTGGTGTTCAGAGAGTCCTGGTTAATTCAGCCTCCACACAGAAGAGAAGCAAGATACCCCGAAGCCAGGGCTGTAGCAGAGAGGCCAGTCCATCTCGGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011333_MULTIEX1-6/14=5-7
Average complexity
C3
Mappability confidence:
85%=83=89%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000015071fB1747
Main Skipping Isoform:
ENSBTAT00000015071fB1746
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCATCATCACCTGACAAAAATGA
R:
ACCAGGACTCTCTGAACACCA
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development