GgaEX0018725 @ galGal3
Exon Skipping
Gene
ENSGALG00000012394 | NID2
Description
NA
Coordinates
chr5:60687164-60688109:-
Coord C1 exon
chr5:60687966-60688109
Coord A exon
chr5:60687396-60687524
Coord C2 exon
chr5:60687164-60687307
Length
129 bp
Sequences
Splice sites
3' ss Seq
GGTGTCTCTCCTTCCTGCAGATG
3' ss Score
11.99
5' ss Seq
TGTGTAAGT
5' ss Score
7.65
Exon sequences
Seq C1 exon
GGGATGCTGAGGTGCCACCGGTGAACCCGTGCCATGATGGCACACATGCGTGCGAGGAGACGGCGCGCTGCCAGCCTGGCACGGGGCTGGGGTACACGTGCGAGTGTGCAGCCGGGTACCGTGGGGATGGACGGGGCTGCCAAG
Seq A exon
ATGTGGATGAGTGTGAGGAAGGCCTCGGCCAGTGCGGCCCTTTCTCTGTCTGCCTGAACGTGCTGGGCAGCTACCGCTGCGAGTGCCACAGCGGCTACCGGCCGGCCGAAGATGGGCACGGCTGTGTGT
Seq C2 exon
TGCCGACCCCTGCGGCTGACCCCTGTGAGGTTGGGAGGCACCCATGCGCTCCGAGGGACCGGGCGCGCTGCCTGCCCCGTGCCGGGGGTCAGCCTGCCTGCGAGTGCCTGCCCGGGTACGCCGGCGACGGCCGCGTCTGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012394-'7-10,'7-9,8-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=75.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5)
C2:
PF126622=cEGF=PU(80.0=32.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAACCCGTGCCATGATGG
R:
GTACCCGGGCAGGCACTC
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]