BtaEX6053093 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021945 | NID2
Description
Bos taurus nidogen 2 (osteonidogen) (NID2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102065]
Coordinates
chr10:44915071-44917377:-
Coord C1 exon
chr10:44917234-44917377
Coord A exon
chr10:44916409-44916537
Coord C2 exon
chr10:44915071-44915214
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTACTCCTCTTTAGATG
3' ss Score
9.5
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GAGACTCCGAGCCCACCCCAGTGAATCCTTGCTATGATGGGAGCCACACATGTGCCACCACAGCTCGGTGCCATCCGGCGACTGGTGTGGACTACACCTGCGAGTGTGCATCTGGGTACCAGGGAGATGGACGGAATTGTGTGG
Seq A exon
ATGTCAATGAATGTGCGACTGGCTTCCACCGCTGCGGCCCCAACTCTGTGTGCGTCAACCTGCTGGGGAGCTACAGATGTGAGTGCCGGAGTGGCTACGAGTTTGCAGACGACCGGCACACCTGCATCT
Seq C2 exon
TGATCACCCCACCTCCCAACCCCTGTGAGGATGGCCATCATAACTGTGCTCCCGCCAGCCAGGCCCGGTGCATTCACCATGGAGACGGCTCCTTCAGCTGCGCCTGCCTGCCTGGTTATGCCGGAGACGGGCACCGGTGCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021945-'23-15,'23-14,24-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=WD(100=75.5),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.5)
C2:
PF126622=cEGF=PU(81.8=36.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGCTATGATGGGAGCCA
R:
TCTCCGGCATAACCAGGCAG
Band lengths:
246-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]