GgaEX0018726 @ galGal3
Exon Skipping
Gene
ENSGALG00000012394 | NID2
Description
NA
Coordinates
chr5:60686968-60687524:-
Coord C1 exon
chr5:60687396-60687524
Coord A exon
chr5:60687164-60687307
Coord C2 exon
chr5:60686968-60687087
Length
144 bp
Sequences
Splice sites
3' ss Seq
CCATCTTTGTGTCCCCACAGTGC
3' ss Score
11.41
5' ss Seq
CCGGTACGG
5' ss Score
9.77
Exon sequences
Seq C1 exon
ATGTGGATGAGTGTGAGGAAGGCCTCGGCCAGTGCGGCCCTTTCTCTGTCTGCCTGAACGTGCTGGGCAGCTACCGCTGCGAGTGCCACAGCGGCTACCGGCCGGCCGAAGATGGGCACGGCTGTGTGT
Seq A exon
TGCCGACCCCTGCGGCTGACCCCTGTGAGGTTGGGAGGCACCCATGCGCTCCGAGGGACCGGGCGCGCTGCCTGCCCCGTGCCGGGGGTCAGCCTGCCTGCGAGTGCCTGCCCGGGTACGCCGGCGACGGCCGCGTCTGCTCCG
Seq C2 exon
ATGTGAATGAGTGCACCCTAAACCTGTGTCACCCTGCTGCCATCTGCTACAACACGCCGGGCTCATTCTCCTGCCAGTGCCAGCCCGGTTACGAAGGCGATGGCTTCCAGTGCACGCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012394-'8-11,'8-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.5)
A:
PF126622=cEGF=PU(80.0=32.7)
C2:
PF126622=cEGF=PD(15.0=7.3),PF129472=EGF_3=WD(100=82.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGAGTGTGAGGAAGGC
R:
CGTGCACTGGAAGCCATCG
Band lengths:
243-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]