GgaEX0018753 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33602408-33611668:-
Coord C1 exon
chr7:33611519-33611668
Coord A exon
chr7:33604890-33605041
Coord C2 exon
chr7:33602408-33602548
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGGTGTGCTCTGTGTTTCAGTCT
3' ss Score
8.95
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GTTTATCAATAGATTATGTGGAGAACAAACTTTACTGGATCAGTTCAGGAAATGGAACCATTAATAGATGCAATCTGGATGGTGGCAATCTTGAAATAATAGACTCAATGAAAGAAGATTTACCGAAAGCCACAGCTTTAACCATAATGG
Seq A exon
TCTCACCCAGATAGAAAAGGACTGTTTTGCTTTGATTCCAACAACCATTGAGATTGATGAATAGATGGGAACAAGCTGGCTGAAATTAATTGTGATAAAAATGAAAATAAATTGTTATAAGGGAAACAACTGAAGGCCTTGGCATTGGTTAG
Seq C2 exon
ATAAAAAGCTTTGGTGGGCAGACCAGAATTTAGCTCAGATTGGAACCTGTAACAAACGAGATGGAAGGAACCCAACTATCCTGCGAAACAAGACTTCAGGTGTTGTGCATATGAAAGTATATGATAAAGCAGCACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'49-57,'49-56,50-57
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(13.2=9.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGAACAAACTTTACTGGA
R:
TGCACAACACCTGAAGTCTTGT
Band lengths:
243-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]