GgaEX0018753 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31487027-31495849:-
Coord C1 exon
chr7:31495700-31495849
Coord A exon
chr7:31489071-31489222
Coord C2 exon
chr7:31487027-31487167
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGGTGTGCTCTGTGTTTCAGTCT
3' ss Score
8.95
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
GTTTATCAATAGATTATGTGGAGAACAAACTTTACTGGATCAGTTCAGGAAATGGAACCATTAATAGATGCAATCTGGATGGTGGCAATCTTGAAATAATAGACTCAATGAAAGAAGATTTACCGAAAGCCACAGCTTTAACCATAATGG
Seq A exon
TCTCACCCAGATAGAAAAGGACTGTTTTGCTTTGATTCCAACAACCATTGAGATTGATGAATAGATGGGAACAAGCTGGCTGAAATTAATTGTGATAAAAATGAAAATAAATTGTTATAAGGGAAACAACTGAAGGCCTTGGCATTGGTTAG
Seq C2 exon
ATAAAAAGCTTTGGTGGGCAGACCAGAATTTAGCTCAGATTGGAACCTGTAACAAACGAGATGGAAGGAACCCAACTATCCTGCGAAACAAGACTTCAGGTGTTGTGCATATGAAAGTATATGATAAAGCAGCACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407_MULTIEX3-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.042
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(13.2=9.8)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000020272fB2224
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAGAACAAACTTTACTGGA
R:
TGCACAACACCTGAAGTCTTGT
Band lengths:
243-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]