GgaEX0018755 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33596011-33598400:-
Coord C1 exon
chr7:33598269-33598400
Coord A exon
chr7:33597752-33597833
Coord C2 exon
chr7:33596011-33596145
Length
82 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTGTATCTATTGTAGTTT
3' ss Score
7.52
5' ss Seq
AATGTATGG
5' ss Score
3.37
Exon sequences
Seq C1 exon
GTATAGAATCATTTATTATGTATTCTGTTCATGAAGGGATTAGAGGAATTTCTCTTGATCCAAATGATAAAATGGAAGCTTTAATGCCTGTATCTGGAACCTCATTTGCAGTGGGCATAGACTTCCATGCAG
Seq A exon
TTTCCATGGAAATAAATAGGAGGCATTACTTTTGAAGAAATCAACCGTAATATCCTGAAGTACAGCATATTATTGGAATAAT
Seq C2 exon
GTAATGATACAATCTATTGGACAGACATGGGTTTCAACAAAATTAGCAGATCTAAACGGGACCAAACATGGAAAGAAGATGTTGTTACAAATGGCTTGGGAAGAGTTGAAGGCATTGCAGTGGATTGGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'53-61,'53-60,54-61
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005812=Ldl_recept_b=WD(100=89.1),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACCTCATTTGCAGTGGG
R:
TCCAATCCACTGCAATGCCTT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]