GgaEX0018755 @ galGal4
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
low density lipoprotein receptor-related protein 1B [Source:HGNC Symbol;Acc:HGNC:6693]
Coordinates
chr7:31480630-31483019:-
Coord C1 exon
chr7:31482888-31483019
Coord A exon
chr7:31482371-31482452
Coord C2 exon
chr7:31480630-31480764
Length
82 bp
Sequences
Splice sites
3' ss Seq
GCTCTTTGTATCTATTGTAGTTT
3' ss Score
7.52
5' ss Seq
AATGTATGG
5' ss Score
3.37
Exon sequences
Seq C1 exon
GTATAGAATCATTTATTATGTATTCTGTTCATGAAGGGATTAGAGGAATTTCTCTTGATCCAAATGATAAAATGGAAGCTTTAATGCCTGTATCTGGAACCTCATTTGCAGTGGGCATAGACTTCCATGCAG
Seq A exon
TTTCCATGGAAATAAATAGGAGGCATTACTTTTGAAGAAATCAACCGTAATATCCTGAAGTACAGCATATTATTGGAATAAT
Seq C2 exon
GTAATGATACAATCTATTGGACAGACATGGGTTTCAACAAAATTAGCAGATCTAAACGGGACCAAACATGGAAAGAAGATGTTGTTACAAATGGCTTGGGAAGAGTTGAAGGCATTGCAGTGGATTGGATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'48-72,'48-71,49-72
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0005812=Ldl_recept_b=WD(100=89.1),PF0005812=Ldl_recept_b=PU(0.1=0.0)
Main Inclusion Isoform:
ENSGALT00000020272fB2225
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACCTCATTTGCAGTGGG
R:
TCCAATCCACTGCAATGCCTT
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]