GgaEX0018758 @ galGal3
Exon Skipping
Gene
ENSGALG00000012407 | LRP1B
Description
NA
Coordinates
chr7:33560059-33562143:-
Coord C1 exon
chr7:33562021-33562143
Coord A exon
chr7:33560848-33560967
Coord C2 exon
chr7:33560059-33560187
Length
120 bp
Sequences
Splice sites
3' ss Seq
GTGGCTGGTGTCATTCCTAGATT
3' ss Score
6.72
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TTCAAAACAAACCCACATGTGAAGAAAATTATTTTGGTTGTCCTAGTGGAAGATGTATTCTGAACACCTGGCTTTGTGATGGGCAGAAAGACTGCGAGGATGGTGTGGATGAATTGCACTGTG
Seq A exon
ATTCGTCCTGCTCGTGGAATCAGTTTGCTTGTTCTGCAGACAAGTGCATCTCTAAGCAATGGACTTGTGATGGTGAGGATGATTGTGGAAATGGTTTAGATGAGAGTGATGCTATTTGTG
Seq C2 exon
GTTCAGTGACATGTGCTGTGGGAACATTCAGTTGCCTAGGCTCCCACGCCTGTGTTCCTCACCACTGGCTTTGTGATGGTGAAAGAGACTGTCCAAATGGAAGTGATGAGCTCTCTACAGCAGGCTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012407-'74-83,'74-82,75-83
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=88.1)
A:
PF0005713=Ldl_recept_a=WD(100=95.1)
C2:
PF0005713=Ldl_recept_a=WD(100=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAACAAACCCACATGTGAAGA
R:
AGCCTGCTGTAGAGAGCTCAT
Band lengths:
248-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]