GgaEX0018794 @ galGal3
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
NA
Coordinates
chr7:34772219-34817917:-
Coord C1 exon
chr7:34817744-34817917
Coord A exon
chr7:34786055-34786151
Coord C2 exon
chr7:34772219-34772587
Length
97 bp
Sequences
Splice sites
3' ss Seq
CTTTGTTCTTTCCTCCTCAGTTC
3' ss Score
10.57
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
TTTGGTTGCTGATACTGTGGTGTTCAACTCTGCTTTTAATATGGAATCGTTTCTTACGTCCATTGGAAAATTTATGAAGCTGATTCCTGACCACAGACCTAAGGATTTGGAAAAAATAATCAGACCGAAGTGCCAAGTTCTCTATTTTCCAGTCAGGTTTCCTGATGTGAGCAG
Seq A exon
TTCCCATTCAATCAGCTCAGAGACATACGTGAAAAGTTTTTGGGAGCAAACTTGTTATCAGCCTTCCTACAGTTTCCACCTACCCCTTCTGTCTACT
Seq C2 exon
GTTCATGCCAGAACATAAGCTTGCCCATTTGGAAAACGTAATTGGTGTTAAAAGAAATGGAGATTTTTATCAACGTGAGGGCCTGCCTGGGCAGCAGAAGAGCAGAGCTTTGGGAGGTTTAATGAAAAACAGCAACGCGTGTCGTGAGTCTGGACTTTGTGAAACACAGCCTGGACTTTGTACCACACAGCATGAGGGACTGCATTCCCCATTAACAGCAGCAGGGAGATTGAACAAGTCTGAAGCATCAGAAAGTACAAATCCTTGTCAAGAAGAAGATAAGCAACATGTGACTTTTAACCTCTGTAATATCTGGAGTGGAATGGACTATCTGCAGAGACCTTTACATGTTGTCTGGCCTCACAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424-'13-15,'13-13,14-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.238
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PD(30.4=86.4)
A:
NO
C2:
PF0053415=Glycos_transf_1=PU(5.0=5.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATTCCTGACCACAGACC
R:
GCAGGCCCTCACGTTGATAAA
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event