GgaEX0018793 @ galGal3
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
NA
Coordinates
chr7:34772219-34820950:-
Coord C1 exon
chr7:34820783-34820950
Coord A exon
chr7:34817744-34817917
Coord C2 exon
chr7:34772219-34772587
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACCTTCACTGCTTTTTACAGTTT
3' ss Score
7.94
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GATCCTCTTTGCAAGCTCCGTGCTTAACCTGGCTGAACTCGCTGCCCTGCGCCCTGACCTGGGCAAATTGAAAAAGGTCCTCTACTTCCATGAGAACCAATTGGCGTATCCTGTCCAGAAGTGCAAGGAAAGGGATTTTCAGTATGGATACAACCAGGTTCTTTCATG
Seq A exon
TTTGGTTGCTGATACTGTGGTGTTCAACTCTGCTTTTAATATGGAATCGTTTCTTACGTCCATTGGAAAATTTATGAAGCTGATTCCTGACCACAGACCTAAGGATTTGGAAAAAATAATCAGACCGAAGTGCCAAGTTCTCTATTTTCCAGTCAGGTTTCCTGATGTGAGCAG
Seq C2 exon
GTTCATGCCAGAACATAAGCTTGCCCATTTGGAAAACGTAATTGGTGTTAAAAGAAATGGAGATTTTTATCAACGTGAGGGCCTGCCTGGGCAGCAGAAGAGCAGAGCTTTGGGAGGTTTAATGAAAAACAGCAACGCGTGTCGTGAGTCTGGACTTTGTGAAACACAGCCTGGACTTTGTACCACACAGCATGAGGGACTGCATTCCCCATTAACAGCAGCAGGGAGATTGAACAAGTCTGAAGCATCAGAAAGTACAAATCCTTGTCAAGAAGAAGATAAGCAACATGTGACTTTTAACCTCTGTAATATCTGGAGTGGAATGGACTATCTGCAGAGACCTTTACATGTTGTCTGGCCTCACAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424-'12-15,'12-11,13-15
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.238
Domain overlap (PFAM):
C1:
PF120383=DUF3524=FE(33.3=100)
A:
PF120383=DUF3524=PD(30.4=86.4)
C2:
PF0053415=Glycos_transf_1=PU(5.0=5.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCTTTGCAAGCTCCGTG
R:
GCAGGCCCTCACGTTGATAAA
Band lengths:
253-427
Functional annotations
There are 0 annotated functions for this event