GgaEX0018793 @ galGal4
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
glycosyltransferase-like domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012939]
Coordinates
chr7:32652426-32730257:-
Coord C1 exon
chr7:32730047-32730257
Coord A exon
chr7:32697951-32698124
Coord C2 exon
chr7:32652426-32652794
Length
174 bp
Sequences
Splice sites
3' ss Seq
ACCTTCACTGCTTTTTACAGTTT
3' ss Score
7.94
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATTCCAGACAGAGCTGAAGCAGTGGGAAGATGAGTGTTCTTCTCATTGAGGCTTTTTATGGCGGTTCCCACAAACAGCTGATGGATCTTCTTCAAGAAGAGCTGAAAGAAGAATGTGTCCTCTGTACTCTCCCTGCCAAGAAGTGGCATTGGAAAGCACGGACTGCTGCTCTTTATTTCATGCAAACGGTGCCAGCAAGTGCTAATTACAG
Seq A exon
TTTGGTTGCTGATACTGTGGTGTTCAACTCTGCTTTTAATATGGAATCGTTTCTTACGTCCATTGGAAAATTTATGAAGCTGATTCCTGACCACAGACCTAAGGATTTGGAAAAAATAATCAGACCGAAGTGCCAAGTTCTCTATTTTCCAGTCAGGTTTCCTGATGTGAGCAG
Seq C2 exon
GTTCATGCCAGAACATAAGCTTGCCCATTTGGAAAACGTAATTGGTGTTAAAAGAAATGGAGATTTTTATCAACGTGAGGGCCTGCCTGGGCAGCAGAAGAGCAGAGCTTTGGGAGGTTTAATGAAAAACAGCAACGCGTGTCGTGAGTCTGGACTTTGTGAAACACAGCCTGGACTTTGTACCACACAGCATGAGGGACTGCATTCCCCATTAACAGCAGCAGGGAGATTGAACAAGTCTGAAGCATCAGAAAGTACAAATCCTTGTCAAGAAGAAGATAAGCAACATGTGACTTTTAACCTCTGTAATATCTGGAGTGGAATGGACTATCTGCAGAGACCTTTACATGTTGTCTGGCCTCACAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424_MULTIEX3-6/8=C1-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PU(67.4=98.4),PF091806=ProRS-C_1=WD(100=50.8)
A:
PF120383=DUF3524=PD(30.4=86.4)
C2:
PF0053415=Glycos_transf_1=PU(5.0=5.6)
Main Skipping Isoform:
ENSGALT00000020306fB8089
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGGACTGCTGCTCTTTAT
R:
TCCCTCATGCTGTGTGGTACA
Band lengths:
255-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]