GgaEX1027685 @ galGal4
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
glycosyltransferase-like domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012939]
Coordinates
chr7:32652426-32730257:-
Coord C1 exon
chr7:32730047-32730257
Coord A exon
chr7:32700990-32701157
Coord C2 exon
chr7:32652426-32652794
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACTGCTCTCCTTGTTTCCAGGAT
3' ss Score
10.97
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATTCCAGACAGAGCTGAAGCAGTGGGAAGATGAGTGTTCTTCTCATTGAGGCTTTTTATGGCGGTTCCCACAAACAGCTGATGGATCTTCTTCAAGAAGAGCTGAAAGAAGAATGTGTCCTCTGTACTCTCCCTGCCAAGAAGTGGCATTGGAAAGCACGGACTGCTGCTCTTTATTTCATGCAAACGGTGCCAGCAAGTGCTAATTACAG
Seq A exon
GATCCTCTTTGCAAGCTCCGTGCTTAACCTGGCTGAACTCGCTGCCCTGCGCCCTGACCTGGGCAAATTGAAAAAGGTCCTCTACTTCCATGAGAACCAATTGGCGTATCCTGTCCAGAAGTGCAAGGAAAGGGATTTTCAGTATGGATACAACCAGGTTCTTTCATG
Seq C2 exon
GTTCATGCCAGAACATAAGCTTGCCCATTTGGAAAACGTAATTGGTGTTAAAAGAAATGGAGATTTTTATCAACGTGAGGGCCTGCCTGGGCAGCAGAAGAGCAGAGCTTTGGGAGGTTTAATGAAAAACAGCAACGCGTGTCGTGAGTCTGGACTTTGTGAAACACAGCCTGGACTTTGTACCACACAGCATGAGGGACTGCATTCCCCATTAACAGCAGCAGGGAGATTGAACAAGTCTGAAGCATCAGAAAGTACAAATCCTTGTCAAGAAGAAGATAAGCAACATGTGACTTTTAACCTCTGTAATATCTGGAGTGGAATGGACTATCTGCAGAGACCTTTACATGTTGTCTGGCCTCACAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424_MULTIEX3-5/8=C1-8
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.241
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PU(67.4=98.4),PF091806=ProRS-C_1=WD(100=50.8)
A:
PF120383=DUF3524=FE(33.3=100)
C2:
PF0053415=Glycos_transf_1=PU(5.0=5.6)
Main Skipping Isoform:
ENSGALT00000020306fB8094
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGGACTGCTGCTCTTTAT
R:
TCCCTCATGCTGTGTGGTACA
Band lengths:
255-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]