GgaEX1027682 @ galGal4
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
glycosyltransferase-like domain-containing protein 1 [Source:RefSeq peptide;Acc:NP_001012939]
Coordinates
chr7:32700990-32730257:-
Coord C1 exon
chr7:32730047-32730257
Coord A exon
chr7:32718830-32718987
Coord C2 exon
chr7:32700990-32701157
Length
158 bp
Sequences
Splice sites
3' ss Seq
ACTGTTTCATCTTTTCGCAGATT
3' ss Score
10.72
5' ss Seq
GAGGTTAGA
5' ss Score
4.15
Exon sequences
Seq C1 exon
ATTCCAGACAGAGCTGAAGCAGTGGGAAGATGAGTGTTCTTCTCATTGAGGCTTTTTATGGCGGTTCCCACAAACAGCTGATGGATCTTCTTCAAGAAGAGCTGAAAGAAGAATGTGTCCTCTGTACTCTCCCTGCCAAGAAGTGGCATTGGAAAGCACGGACTGCTGCTCTTTATTTCATGCAAACGGTGCCAGCAAGTGCTAATTACAG
Seq A exon
ATTGCCAGCATTAAGTGCCAGCCCATGTGAGCAGCCTGCTGACCACGAAGCCCAACCACGCTCGGTCTATTAGCTGTGCTTCAGAAGTATTTGTTCAGTTTTTCCTCAGATGGATAACCAATATGGAACATTCTGTCCACAGAAGTCTTATTAAAGAG
Seq C2 exon
GATCCTCTTTGCAAGCTCCGTGCTTAACCTGGCTGAACTCGCTGCCCTGCGCCCTGACCTGGGCAAATTGAAAAAGGTCCTCTACTTCCATGAGAACCAATTGGCGTATCCTGTCCAGAAGTGCAAGGAAAGGGATTTTCAGTATGGATACAACCAGGTTCTTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424_MULTIEX3-2/8=C1-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.375 C2=0.000
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PU(67.4=98.4),PF091806=ProRS-C_1=WD(100=50.8)
A:
PF120383=DUF3524=PD(12.9=36.0)
C2:
PF120383=DUF3524=FE(33.3=100)
Main Inclusion Isoform:
ENSGALT00000020306fB8095
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCTGAAGCAGTGGGAAG
R:
AGTTCAGCCAGGTTAAGCACG
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]