BtaEX0016457 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001132 | GTDC1
Description
Bos taurus glycosyltransferase-like domain containing 1 (GTDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076035]
Coordinates
chr2:52584334-52664915:+
Coord C1 exon
chr2:52584334-52584512
Coord A exon
chr2:52661007-52661174
Coord C2 exon
chr2:52664742-52664915
Length
168 bp
Sequences
Splice sites
3' ss Seq
CTAATTTCCTTCTTTCCTAGGAT
3' ss Score
10.09
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
Exon sequences
Seq C1 exon
ATGAGTATTCTCATCCTTGAGGCATTCTATGGTGGGTCCCATAAACAGCTGGTGGATCTGCTTCAAGAAGAGTTAGAAGACTCTGTCCTTTATACCCTGCCTGCAAAGAAATGGCACTGGAGAGCAAGGACATCAGCTTTATACTTCTCTCAGAATATTCCCACCAGTGAGCACTACAG
Seq A exon
GATCCTCTTCGCAAGCTCAGTGCTTAACCTGACTGAACTGGCTGCCCTTCGACCTGACCTTGGGAAATTGAAAAAGATTCTGTACTTTCATGAGAACCAATTGGTATATCCTGTCAAGAAATGTCAGGAGAGGGATTTCCAATATGGATACAACCAAATTCTCTCCTG
Seq C2 exon
CCTGGTGGCTGATGTGGTGGTATTCAACTCAGTTTTTAATATGGAGTCATTTCTCACTTCTATTGGAAAATTCATGAAGTTGATTCCTGATCACAGACCCAAGGATCTGGAAAGCATCATCAGACCCAAGTGCCAAGTTATTTACTTTCCCATCAGGTTTCCTGACGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001132_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PU(35.3=98.3)
A:
PF120383=DUF3524=FE(33.5=100)
C2:
PF120383=DUF3524=PD(30.5=86.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCCATAAACAGCTGGTGG
R:
TCCTTGGGTCTGTGATCAGGA
Band lengths:
250-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development