GgaEX1027685 @ galGal3
Exon Skipping
Gene
ENSGALG00000012424 | GTDC1
Description
NA
Coordinates
chr7:34817744-34849943:-
Coord C1 exon
chr7:34849733-34849943
Coord A exon
chr7:34820783-34820950
Coord C2 exon
chr7:34817744-34817917
Length
168 bp
Sequences
Splice sites
3' ss Seq
ACTGCTCTCCTTGTTTCCAGGAT
3' ss Score
10.97
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
ATTCCAGACAGAGCTGAAGCAGTGGGAAGATGAGTGTTCTTCTCATTGAGGCTTTTTATGGCGGTTCCCACAAACAGCTGATGGATCTTCTTCAAGAAGAGCTGAAAGAAGAATGTGTCCTCTGTACTCTCCCTGCCAAGAAGTGGCATTGGAAAGCACGGACTGCTGCTCTTTATTTCATGCAAACGGTGCCAGCAAGTGCTAATTACAG
Seq A exon
GATCCTCTTTGCAAGCTCCGTGCTTAACCTGGCTGAACTCGCTGCCCTGCGCCCTGACCTGGGCAAATTGAAAAAGGTCCTCTACTTCCATGAGAACCAATTGGCGTATCCTGTCCAGAAGTGCAAGGAAAGGGATTTTCAGTATGGATACAACCAGGTTCTTTCATG
Seq C2 exon
TTTGGTTGCTGATACTGTGGTGTTCAACTCTGCTTTTAATATGGAATCGTTTCTTACGTCCATTGGAAAATTTATGAAGCTGATTCCTGACCACAGACCTAAGGATTTGGAAAAAATAATCAGACCGAAGTGCCAAGTTCTCTATTTTCCAGTCAGGTTTCCTGATGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012424-'9-11,'9-10,12-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF120383=DUF3524=PU(35.7=98.4),PF091806=ProRS-C_1=WD(100=49.2)
A:
PF120383=DUF3524=FE(33.3=100)
C2:
PF120383=DUF3524=PD(30.4=86.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGCGGTTCCCACAAACAG
R:
GGTCTGTGGTCAGGAATCAGC
Band lengths:
254-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]